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Scientists create cellular atlas for maturing minds in mouse model

SEATTLE โ€” What if we could pinpoint exactly where aging begins in the brain? Scientists at the Allen Institute have done just that, creating the first detailed cellular atlas of brain aging by analyzing millions of individual cells and identifying key regions where age-related changes first emerge.

The brain is like a massive city with thousands of different neighborhoods, each populated by unique types of cells performing specific jobs. Until now, researchers havenโ€™t had a detailed โ€œcensusโ€ showing how each neighborhood changes as the city ages. This study, published in Nature, provides exactly that, examining cells from young adult mice (2 months old) and aged mice (18 months old). While mice age differently than humans, this comparison roughly mirrors the differences between young adult and older adult human brains.

Researchers analyzed 16 different brain regions, covering about 35% of the mouse brainโ€™s total volume. They identified 847 distinct types of cells and discovered that certain cell populations, particularly support cells called glia, were especially sensitive to aging. They found significant changes around the third ventricle in the hypothalamus, which is the brainโ€™s master control center that regulates essential functions like hunger, body temperature, sleep, and hormone production.

A map of a mouse brain
Non-neuronal brain cells called tanycytes illuminated and color coded according to their depth in the hypothalamus brain of a mouse. They are one of the cell types in the mouse brain that show a large number of gene transcripts changing with age. (Credit:
Allen Institute)

As the brain ages, it shows increased immune activity across various cell types. The researchers observed this, particularly in microglia, which are specialized cells that act as the brainโ€™s maintenance and immune defense system. They also found this in border-associated macrophages, another type of immune cell. These cells showed signs of increased inflammatory activity in aged mice, suggesting they were working harder to maintain brain health.

The research team discovered fascinating changes in specialized cells called tanycytes and ependymal cells that line fluid-filled chambers in the brain, particularly around the third ventricle.

โ€œOur hypothesis is that those cell types are getting less efficient at integrating signals from our environment or from things that weโ€™re consuming,โ€ says lead author Kelly Jin, Ph.D., in a statement. This inefficiency might contribute to broader aging effects throughout the body.

The study revealed changes in cells that produce myelin, the crucial insulating material around nerve fibers. Like the protective coating around electrical wires, myelin helps neurons communicate effectively. The researchers found that aging affects these insulator-producing cells, which could impact how well brain circuits function.

Microglia
Microglia act as the central nervous systemโ€™s primary defense mechanism. In older mice, they were working harder. (ART-ur/Shutterstock)

Most intriguingly, the researchers identified specific groups of neurons in the hypothalamus that showed dramatic changes with age. These neurons, which help control appetite, metabolism, and energy use throughout the body, showed signs of both decreased function and increased immune activity. This finding aligns with previous research suggesting that dietary factors, like intermittent fasting or calorie restriction, might influence lifespan.

โ€œAging is the most important risk factor for Alzheimerโ€™s disease and many other devastating brain disorders. These results provide a highly detailed map for which brain cells may be most affected by aging,โ€ says Dr. Richard J. Hodes, director of NIHโ€™s National Institute on Aging.

While this research was conducted in mice, the findings provide a crucial roadmap for understanding human brain aging. The identification of specific vulnerable cell types and regions gives scientists clear targets for future development of therapies to maintain brain health throughout life.

Paper Summary

Methodology

The researchers used single-cell RNA sequencing to analyze individual brain cellsโ€™ gene expression patterns. They collected brain tissue from both young and aged mice, carefully dissected specific regions, and isolated individual cells. These cells were then processed to determine which genes were active in each cell, creating a detailed molecular profile of each cell type and how it changes with age.

Results

The study identified 2,449 genes that showed significant changes with age across various cell types. Some changes were common across multiple cell types, while others were specific to particular cell populations. The researchers found that certain brain regions, particularly around the third ventricle, showed more dramatic age-related changes than others.

Limitations

The study was conducted in mice, so findings need to be validated in humans. Additionally, the research examined only two age points and covered about 35% of the brain, leaving room for future studies to explore other regions and intermediate ages.

Discussion and Takeaways

This research provides the most detailed view yet of how individual brain cells age, identifying specific cell populations that might be key targets for interventions to promote healthy brain aging. The findings suggest that the area around the third ventricle might be particularly important in the aging process.

Funding and Disclosures

The research was funded by NIH grants R01AG066027 and U19MH114830, specifically through the National Institute on Aging and the BRAIN Initiative. One author reported being on the scientific advisory board of MapLight Therapeutics, Inc. The researchers note that the content is solely their responsibility and doesnโ€™t necessarily represent official NIH views.

Publication Information

This study was published in Nature in January 2025, titled โ€œBrain-wide cell-type-specific transcriptomic signatures of healthy ageing in miceโ€ with Kelly Jin as the lead author and researchers from the Allen Institute for Brain Science.

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5 Comments

  1. Sir Pikey says:

    Did they study Buden for this??

    1. B-Ryan says:

      Whoโ€™s Buden?
      Looks like the need to study you.

    2. JD says:

      At least Biden has a brain, unlike the current office holder. My acquaintances are betting he quits or has the 25th amendment applied to him. That is, unless he attempts to change it like he thinks he can change the 14th. To quote his favorite sage: โ€œWhat a maroon!โ€~Bugs Bunny

  2. Tim Woodworth says:

    I would like to read a similar study that includes the effects of the on the brain.

  3. Last Eve says:

    โ€˜scienceโ€™ is like a man in a small boat with a bucket claiming to โ€˜measureโ€™ the oceanโ€ฆ